ProtegeMCP

The server copies an embedded .NET DLL to a temporary directory (`java.io.tmpdir`) and executes it via `ProcessBuilder`. This is a significant security risk as temporary directories can sometimes be writable by other users/processes, potentially leading to DLL hijacking or arbitrary code execution if the temporary file is replaced with a malicious executable. Furthermore, the embedded HTTP server listens on port 8080 and processes requests (including ontology modification operations like deleting/creating concepts, adding/removing axioms) without any apparent authentication or authorization mechanisms. This could allow any entity on the local network to manipulate or corrupt the active Protege ontology.