togomcp

The server uses `httpx` for external network calls and environment variables (`NCBI_API_KEY`) for API keys, which are good practices. However, as an MCP server, it processes LLM-generated inputs for SPARQL queries and file operations. The `save_MIE_file` function in `togo_mcp/admin.py` constructs a file path as `f"mie/{dbname}.yaml"` where `dbname` is provided by the LLM. Without explicit input sanitization, this could be vulnerable to path traversal (e.g., `dbname="../../malicious.txt"`), allowing an LLM to write files outside the intended directory. Additionally, any system executing LLM-generated SPARQL queries against a backend database inherently carries risks of denial-of-service or information leakage if the RDF store itself is not rigorously secured against complex, potentially malicious queries.