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enzymeml-mcp

Verified Safe

by EnzymeML

Overview

Provides an MCP server for AI assistants to interact with EnzymeML documents, enabling reading, modification, searching, and visualization of biochemical data.

Installation

Run Command
cargo run --release

Security Notes

The server uses the `meval` crate to parse and potentially evaluate mathematical expressions from `EnzymeMLDocument` equations. If the `equation` strings can be manipulated by untrusted input (e.g., via a malicious AI assistant generating document updates), this could lead to denial of service or unexpected behavior. The server also communicates with a local `EnzymeML Suite desktop application` via HTTP on `127.0.0.1:13452`. While local communication is generally safer, it assumes the local system and the Suite application itself are secure. No hardcoded secrets or obvious direct malicious patterns were found in the truncated source. External API calls (UniProt, PubChem, ChEBI) are made to well-known public services.

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Stats

Interest Score0
Security Score6
Cost ClassMedium
Avg Tokens500
Stars0
Forks0
Last Update2026-01-18

Tags

EnzymeMLbiochemical dataMCP serverAI assistantRust